We learned a lot more about yellow fever virus and other flaviviruses:
ID FLYF17DG standard; RNA; VRL; 10862 BP.
AC X03700; K02749;
DT 18-NOV-1986 (Rel. 10, Created)
DT 12-SEP-1993 (Rel. 36, Last updated, Version 3)
DE Yellow fever virus genome (17D vaccine strain)
KW capsid protein; envelope glycoprotein; genome; glycoprotein;
KW polyprotein; replicase.
OS Yellow fever virus
OC Viridae; ss-RNA enveloped viruses; Positive strand RNA viruses;
OC Flaviviridae; Flavivirus (arbovirus group B).
RN [1]
RP 1-10862
RX MEDLINE; 85272570.
RA Rice C.M., Lenches E.M., Eddy S.R., Shin S.J., Sheets R.L.,
RA Strauss J.H.;
RT "Nucleotide sequence of yellow fever virus: implications for
RT flavivirus gene expression and evolution";
RL Science 229:726-733(1985).
DR SWISS-PROT; P03314; POLG_YEFV1.
FH Key Location/Qualifiers
FT source 1..10862
FT /organism="Yellow fever virus"
FT /strain="Flavivirus (mosquito-borne)"
FT mRNA 1..10862
FT /note="PP mRNA"
FT virion 1..10862
FT /note="virion RNA"
FT CDS 119..10354
FT /product="polyprotein precursor"
FT /note="pid:g59339"
FT mat_peptide 122..481
FT /product="capsid protein"
FT mat_peptide 482..973
FT /product="M protein precursor"
FT mat_peptide 749..973
FT /product="M protein"
FT mat_peptide 974..2452
FT /product="envelope protein"
FT mat_peptide 2453..3679
FT /product="NS1 (soluble complement-fixing antigen)"
FT mat_peptide 3680..4180
FT /product="non-structural protein ns2a (putative)"
FT mat_peptide 4181..4569
FT /product="non-structural protein ns2b (putative)"
FT mat_peptide 4570..6439
FT /product="NS3 (put. replicase component)"
FT mat_peptide 6440..7300
FT /product="non-structural protein ns4a (putative)"
FT mat_peptide 7301..7636
FT /product="non-structural protein ns4b (putative)"
FT mat_peptide 7637..>7639
FT /partial
FT /product="NS5 (put. replicase component)"
XX
SQ Sequence 10862 BP; 2963 A; 2314 C; 3087 G; 2498 T; 0 other;
agtaaatcct gtgtgctaat tgaggtgcat tggtctgcaa atcgagttgc taggcaataa 60
acacatttgg attaatttta atcgttcgtt gagcgattag cagagaactg accagaacat 120
gtctggtcgt aaagctcagg gaaaaaccct gggcgtcaat atggtacgac gaggagttcg 180
ctccttgtca aacaaaataa aacaaaaaac aaaacaaatt ggaaacagac ctggaccttc 240
aagaggtgtt caaggattta tctttttctt tttgttcaac attttgactg gaaaaaagat 300
cacagcccac ctaaagaggt tgtggaaaat gctggaccca agacaaggct tggctgttct 360
aaggaaagtc aagagagtgg tggccagttt gatgagagga ttgtcctcaa ggaaacgccg 420
ttcccatgat gttctgactg tgcaattcct aattttggga atgctgttga tgacgggtgg 480
agtgaccttg gtgcggaaaa acagatggtt gctcctaaat gtgacatctg aggacctcgg 540
gaaaacattc tctgtgggca caggcaactg cacaacaaac attttggaag ccaagtactg 600
gtgcccagac tcaatggaat acaactgtcc caatctcagt ccaagagagg agccagatga 660
cattgattgc tggtgctatg gggtggaaaa cgttagagtc gcatatggta agtgtgactc 720
agcaggcagg tctaggaggt caagaagggc cattgacttg cctacgcatg aaaaccatgg 780
tttgaagacc cggcaagaaa aatggatgac tggaagaatg ggtgaaaggc aactccaaaa 840
gattgagaga tggttcgtga ggaacccctt ttttgcagtg acggctctga ccattgccta 900
ccttgtggga agcaacatga cgcaacgagt cgtgattgcc ctactggtct tggctgttgg 960
tccggcctac tcagctcact gcattggaat tactgacagg gatttcattg agggggtgca 1020
tggaggaact tgggtttcag ctaccctgga gcaagacaag tgtgtcactg ttatggcccc 1080
tgacaagcct tcattggaca tctcactaga gacagtagcc attgatagac ctgctgaggt 1140
gaggaaagtg tgttacaatg cagttctcac tcatgtgaag attaatgaca agtgccccag 1200
cactggagag gcccacctag ctgaagagaa cgaaggggac aatgcgtgca agcgcactta 1260
ttctgataga ggctggggca atggctgtgg cctatttggg aaagggagca ttgtggcatg 1320
cgccaaattc acttgtgcca aatccatgag tttgtttgag gttgatcaga ccaaaattca 1380
gtatgtcatc agagcacaat tgcatgtagg ggccaagcag gaaaattgga ataccgacat 1440
taagactctc aagtttgatg ccctgtcagg ctcccaggaa gtcgagttca ttgggtatgg 1500
aaaagctaca ctggaatgcc aggtgcaaac tgcggtggac tttggtaaca gttacatcgc 1560
tgagatggaa acagagagct ggatagtgga cagacagtgg gcccaggact tgaccctgcc 1620
atggcagagt ggaagtggcg gggtgtggag agagatgcat catcttgtcg aatttgaacc 1680
tccgcatgcc gccactatca gagtactggc cctgggaaac caggaaggct ccttgaaaac 1740
agctcttact ggcgcaatga gggttacaaa ggacacaaat gacaacaacc tttacaaact 1800
acatggtgga catgtttctt gcagagtgaa attgtcagct ttgacactca aggggacatc 1860
ctacaaaata tgcactgaca aaatgttttt tgtcaagaac ccaactgaca ctggccatgg 1920
cactgttgtg atgcaggtga aagtgtcaaa aggagccccc tgcaggattc cagtgatagt 1980
agctgatgat cttacagcgg caatcaataa aggcattttg gttacagtta accccatcgc 2040
ctcaaccaat gatgatgaag tgctgattga ggtgaaccca ccttttggag acagctacat 2100
tatcgttggg agaggagatt cacgtctcac ttaccagtgg cacaaagagg gaagctcaat 2160
aggaaagttg ttcactcaga ccatgaaagg cgtggaacgc ctggccgtca tgggagacac 2220
cgcctgggat ttcagctccg ctggagggtt cttcacttcg gttgggaaag gaattcatac 2280
ggtgtttggc tctgcctttc aggggctatt tggcggcttg aactggataa caaaggtcat 2340
catgggggcg gtacttatat gggttggcat caacacaaga aacatgacaa tgtccatgag 2400
catgatcttg gtaggagtga tcatgatgtt tttgtctcta ggagttgggg cggatcaagg 2460
atgcgccatc aactttggca agagagagct caagtgcgga gatggtatct tcatatttag 2520
agactctgat gactggctga acaagtactc atactatcca gaagatcctg tgaagcttgc 2580
atcaatagtg aaagcctctt ttgaagaagg gaagtgtggc ctaaattcag ttgactccct 2640
tgagcatgag atgtggagaa gcagggcaga tgagatcaat gccatttttg aggaaaacga 2700
ggtggacatt tctgttgtcg tgcaggatcc aaagaatgtt taccagagag gaactcatcc 2760
attttccaga attcgggatg gtctgcagta tggttggaag acttggggta agaaccttgt 2820
gttctcccca gggaggaaga atggaagctt catcatagat ggaaagtcca ggaaagaatg 2880
cccgttttca aaccgggtct ggaattcttt ccagatagag gagtttggga cgggagtgtt 2940
caccacacgc gtgtacatgg acgcagtctt tgaatacacc atagactgcg atggatctat 3000
cttgggtgca gcggtgaacg gaaaaaagag tgcccatggc tctccaacat tttggatggg 3060
aagtcatgaa gtaaatggga catggatgat ccacaccttg gaggcattag attacaagga 3120
gtgtgagtgg ccactgacac atacgattgg aacatcagtt gaagagagtg aaatgttcat 3180
gccgagatca atcggaggcc cagttagctc tcacaatcat atccctggat acaaggttca 3240
gacgaacgga ccttggatgc aggtaccact agaagtgaag agagaagctt gcccagggac 3300
tagcgtgatc attgatggca actgtgatgg acggggaaaa tcaaccagat ccaccacgga 3360
tagcgggaaa gttattcctg aatggtgttg ccgctcctgc acaatgccgc ctgtgagctt 3420
ccatggtagt gatgggtgtt ggtatcccat ggaaattagg ccaaggaaaa cgcatgaaag 3480
ccatctggtg cgctcctggg ttacagctgg agaaatacat gctgtccctt ttggtttggt 3540
gagcatgatg atagcaatgg aagtggtcct aaggaaaaga cagggaccaa agcaaatgtt 3600
ggttggagga gtagtgctct tgggagcaat gctggtcggg caagtaactc tccttgattt 3660
gctgaaactc acagtggctg tgggattgca tttccatgag atgaacaatg gaggagacgc 3720
catgtatatg gcgttgattg ctgccttttc aatcagacca gggctgctca tcggctttgg 3780
gctcaggacc ctatggagcc ctcgggaacg ccttgtgctg accctaggag cagccatggt 3840
ggagattgcc ttgggtggcg tgatgggcgg cctgtggaag tatctaaatg cagtttctct 3900
ctgcatcctg acaataaatg ctgttgcttc taggaaagca tcaaatacca tcttgcccct 3960
catggctctg ttgacacctg tcactatggc tgaggtgaga cttgccgcaa tgttcttttg 4020
tgccgtggtt atcatagggg tccttcacca gaatttcaag gacacctcca tgcagaagac 4080
tatacctctg gtggccctca cactcacatc ttacctgggc ttgacacaac cttttttggg 4140
cctgtgtgca tttctggcaa cccgcatatt tgggcgaagg agtatcccag tgaatgaggc 4200
actcgcagca gctggtctag tgggagtgct ggcaggactg gcttttcagg agatggagaa 4260
cttccttggt ccgattgcag ttggaggact cctgatgatg ctggttagcg tggctgggag 4320
ggtggatggg ctagagctca agaagcttgg tgaagtttca tgggaagagg aggcggagat 4380
cagcgggagt tccgcccgct atgatgtggc actcagtgaa caaggggagt tcaagctgct 4440
ttctgaagag aaagtgccat gggaccaggt tgtgatgacc tcgctggcct tggttggggc 4500
tgccctccat ccatttgctc ttctgctggt ccttgctggg tggctgtttc atgtcagggg 4560
agctaggaga agtggggatg tcttgtggga tattcccact cctaagatca tcgaggaatg 4620
tgaacatctg gaggatggga tttatggcat attccagtca accttcttgg gggcctccca 4680
gcgaggagtg ggagtggcac agggaggggt gttccacaca atgtggcatg tcacaagagg 4740
agctttcctt gtcaggaatg gcaagaagtt gattccatct tgggcttcag taaaggaaga 4800
ccttgtcgcc tatggtggct catggaagtt ggaaggcaga tgggatggag aggaagaggt 4860
ccagttgatc gcggctgttc caggaaagaa cgtggtcaac gtccagacaa aaccgagctt 4920
gttcaaagtg aggaatgggg gagaaatcgg ggctgtcgct cttgactatc cgagtggcac 4980
ttcaggatct cctattgtta acaggaacgg agaggtgatt gggctgtacg gcaatggcat 5040
ccttgtcggt gacaactcct tcgtgtccgc catatcccag actgaggtga aggaagaagg 5100
aaaggaggag ctccaagaga tcccgacaat gctaaagaaa ggaatgacaa ctgtccttga 5160
ttttcatcct ggagctggga agacaagacg tttcctccca cagatcttgg ccgagtgcgc 5220
acggagacgc ttgcgcactc ttgtgttggc ccccaccagg gttgttcttt ctgaaatgaa 5280
ggaggctttt cacggcctgg acgtgaaatt ccacacacag gctttttccg ctcacggcag 5340
cgggagagaa gtcattgatg ccatgtgcca tgccacccta acttacagga tgttggaacc 5400
aactagggtt gttaactggg aagtgatcat tatggatgaa gcccattttt tggatccagc 5460
tagcatagcc gctagaggtt gggcagcgca cagagctagg gcaaatgaaa gtgcaacaat 5520
cttgatgaca gccacaccgc ctgggactag tgatgaattt ccacattcaa atggtgaaat 5580
agaagatgtt caaacggaca tacccagtga gccctggaac acagggcatg actggatcct 5640
agctgacaaa aggcccacgg catggttcct tccatccatc agagctgcaa atgtcatggc 5700
tgcctctttg cgtaaggctg gaaagagtgt ggtggtcctg aacaggaaaa cctttgagag 5760
agaatacccc acgataaagc agaagaaacc tgactttata ttggccactg acatagctga 5820
aatgggagcc aacctttgcg tggagcgagt gctggattgc aggacggctt ttaagcctgt 5880
gcttgtggat gaagggagga aggtggcaat aaaagggcca cttcgtatct ccgcatcctc 5940
tgctgctcaa aggagggggc gcattgggag aaatcccaac agagatggag actcatacta 6000
ctattctgag cctacaagtg aaaataatgc ccaccacgtc tgctggttgg aggcctcaat 6060
gctcttggac aacatggagg tgaggggtgg aatggtcgcc ccactctatg gcgttgaagg 6120
aactaaaaca ccagtttccc ctggtgaaat gagactgagg gatgaccaga ggaaagtctt 6180
cagagaacta gtgaggaatt gtgacctgcc cgtttggctt tcgtggcaag tggccaaggc 6240
tggtttgaag acgaatgatc gtaagtggtg ttttgaaggc cctgaggaac atgagatctt 6300
gaatgacagc ggtgaaacag tgaagtgcag ggctcctgga ggagcaaaga agcctctgcg 6360
cccaaggtgg tgtgatgaaa gggtgtcatc tgaccagagt gcgctgtctg aatttattaa 6420
gtttgctgaa ggtaggaggg gagctgctga agtgctagtt gtgctgagtg aactccctga 6480
tttcctggct aaaaaaggtg gagaggcaat ggataccatc agtgtgttcc tccactctga 6540
ggaaggctct agggcttacc gcaatgcact atcaatgatg cctgaggcaa tgacaatagt 6600
catgctgttt atactggctg gactactgac atcgggaatg gtcatctttt tcatgtctcc 6660
caaaggcatc agtagaatgt ctatggcgat gggcacaatg gccggctgtg gatatctcat 6720
gttccttgga ggcgtcaaac ccactcacat ctcctatgtc atgctcatat tctttgtcct 6780
gatggtggtt gtgatccccg agccagggca acaaaggtcc atccaagaca accaagtggc 6840
atacctcatt attggcatcc tgacgctggt ttcagcggtg gcagccaacg agctaggcat 6900
gctggagaaa accaaagagg acctctttgg gaagaagaac ttaattccat ctagtgcttc 6960
accctggagt tggccggatc ttgacctgaa gccaggagct gcctggacag tgtacgttgg 7020
cattgttaca atgctctctc caatgttgca ccactggatc aaagtcgaat atggcaacct 7080
gtctctgtct ggaatagccc agtcagcctc agtcctttct ttcatggaca aggggatacc 7140
attcatgaag atgaatatct cggtcataat gctgctggtc agtggctgga attcaataac 7200
agtgatgcct ctgctctgtg gcatagggtg cgccatgctc cactggtctc tcattttacc 7260
tggaatcaaa gcgcagcagt caaagcttgc acagagaagg gtgttccatg gcgttgccga 7320
gaaccctgtg gttgatggga atccaacagt tgacattgag gaagctcctg aaatgcctgc 7380
cctttatgag aagaaactgg ctctatatct ccttcttgct ctcagcctag cttctgttgc 7440
catgtgcaga acgccctttt cattggctga aggcattgtc ctagcatcag ctgccttagg 7500
gccgctcata gagggaaaca ccagccttct ttggaatgga cccatggctg tctccatgac 7560
aggagtcatg agggggaatc actatgcttt tgtgggagtc atgtacaatc tatggaagat 7620
gaaaactgga cgccggggga gcgcgaatgg aaaaactttg ggtgaagtct ggaagaggga 7680
actgaatctg ttggacaagc gacagtttga gttgtataaa aggaccgaca ttgtggaggt 7740
ggatcgtgat acggcacgca ggcatttggc cgaagggaag gtggacaccg gggtggcggt 7800
ctccaggggg accgcaaagt taaggtggtt ccatgagcgt ggctatgtca agctggaagg 7860
tagggtgatt gacctggggt gtggccgcgg aggctggtgt tactacgctg ctgcgcaaaa 7920
ggaagtgagt ggggtcaaag gatttactct tggaagagac ggccatgaga aacccatgaa 7980
tgtgcaaagt ctgggatgga acatcatcac cttcaaggac aaaactgata tccaccgcct 8040
agaaccagtg aaatgtgaca cccttttgtg tgacattgga gagtcatcat cgtcatcggt 8100
cacagagggg gaaaggaccg tgagagttct tgatactgta gaaaaatggc tggcttgtgg 8160
ggttgacaac ttctgtgtga aggtgttagc tccatacatg ccagatgttc tcgagaaact 8220
ggaattgctc caaaggaggt ttggcggaac agtgatcagg aaccctctct ccaggaattc 8280
cactcatgaa atgtactacg tgtctggagc ccgcagcaat gtcacattta ctgtgaacca 8340
aacatcccgc ctcctgatga ggagaatgag gcgtccaact ggaaaagtga ccctggaggc 8400
tgacgtcatc ctcccaattg ggacacgcag tgttgagaca gacaagggac ccctggacaa 8460
agaggccata gaagaaaggg ttgagaggat aaaatctgag tacatgacct cttggtttta 8520
tgacaatgac aacccctaca ggacctggca ctactgtggc tcctatgtca caaaaacctc 8580
aggaagtgcg gcgagcatgg taaatggtgt tattaaaatt ctgacatatc catgggacag 8640
gatagaggag gtcacaagaa tggcaatgac tgacacaacc ccttttggac agcaaagagt 8700
gtttaaagaa aaagttgaca ccagagcaaa ggatccacca gcgggaacta ggaagatcat 8760
gaaagttgtc aacaggtggc tgttccgcca cctggccaga gaaaagaacc ccagactgtg 8820
cacaaaggaa gaatttattg caaaagtccg aagtcatgca gccattggag cttacctgga 8880
agaacaagaa cagtggaaga ctgccaatga ggctgtccaa gacccaaagt tctgggaact 8940
ggtggatgaa gaaaggaagc tgcaccaaca aggcaggtgt cggacttgtg tgtacaacat 9000
gatggggaaa agagagaaga agctgtcaga gtttgggaaa gcaaagggaa gccgtgccat 9060
atggtatatg tggctgggag cgcggtatct tgagtttgag gccctgggat tcctgaatga 9120
ggaccattgg gcttccaggg aaaactcagg aggaggagtg gaaggcattg gcttacaata 9180
cctaggatat gtgatcagag acctggctgc aatggatggt ggtggattct acgcggatga 9240
caccgctgga tgggacacgc gcatcacaga ggcagacctt gatgatgaac aggagatctt 9300
gaactacatg agcccacatc acaaaaaact ggcacaagca gtgatggaaa tgacatacaa 9360
gaacaaagtg gtgaaagtgt tgagaccagc cccaggaggg aaagcctaca tggatgtcat 9420
aagtcgacga gaccagagag gatccgggca ggtagtgact tatgctctga acaccatcac 9480
caacttgaaa gtccaattga tcagaatggc agaagcagag atggtgatac atcaccaaca 9540
tgttcaagat tgtgatgaat cagttctgac caggctggag gcatggctca ctgagcacgg 9600
atgtgacaga ctgaagagga tggcggtgag tggagacgac tgtgtggtcc ggcccatcga 9660
tgacaggttc ggcctggccc tgtcccatct caacgccatg tccaaggtta gaaaggacat 9720
atctgaatgg cagccatcaa aagggtggaa tgattgggag aatgtgccct tctgttccca 9780
ccacttccat gaactacagc tgaaggatgg caggaggatt gtggtgcctt gccgagaaca 9840
ggacgagctc attgggagag gaagggtgtc tccaggaaac ggctggatga tcaaggaaac 9900
agcttgcctc agcaaagcct atgccaacat gtggtcactg atgtattttc acaaaaggga 9960
catgaggcta ctgtcattgg ctgtttcctc agctgttccc acctcatggg ttccacaagg 10020
acgcacaaca tggtcgattc atgggaaagg ggagtggatg accacggaag acatgcttga 10080
ggtgtggaac agagtatgga taaccaacaa cccacacatg caggacaaga caatggtgaa 10140
aaaatggaga gatgtccctt atctaaccaa gagacaagac aagctgtgcg gatcactgat 10200
tggaatgacc aatagggcca cctgggcctc ccacatccat ttagtcatcc atcgtatccg 10260
aacgctgatt ggacaggaga aatacactga ctacctaaca gtcatggaca ggtattctgt 10320
ggatgctgac ctgcaactgg gtgagcttat ctgaaacacc atctaacagg aataaccggg 10380
atacaaacca cgggtggaga accggactcc ccacaacctg aaaccgggat ataaaccacg 10440
gctggagaac cgggctccgc acttaaaatg aaacagaaac cgggataaaa actacggatg 10500
gagaaccgga ctccacacat tgagacagaa gaagttgtca gcccagaacc ccacacgagt 10560
tttgccactg ctaagctgtg aggcagtgca ggctgggaca gccgacctcc aggttgcgaa 10620
aaacctggtt tctgggacct cccaccccag agtaaaaaga acggagcctc cgctaccacc 10680
ctcccacgtg gtggtagaaa gacggggtct agaggttaga ggagaccctc cagggaacaa 10740
atagtgggac catattgacg ccagggaaag accggagtgg ttctctgctt ttcctccaga 10800
ggtctgtgag cacagtttgc tcaagaataa gcagaccttt ggatgacaaa cacaaaacca 10860
ct 10862
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